miRBase entry: ppa-mir-205

Stem-loop ppa-mir-205


Accession
MI0002846
Description
Pan paniscus ppa-mir-205 precursor miRNA
Gene family
MIPF0000058; mir-205


Sequence

aaagauccucagacaauccaugugcuucucuugUCCUUCAUUCCACCGGAGUCUGucucauacccaaccagauuucaguggagugaaguucaggaggcauggagcugaca
........((((.(..(((((((....((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))))))))))))))..

Structure
aaagaucc    a aa       gcuu      UC           C        ucuca 
        ucag c  uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        |||| |  |||||||    ||||||  ||||||||||| ||||||||     a
        aguc g  agguacg    gaggac  gaagugaggug cuuuagac     c
------ac    - --       ----      uu           a        caacc 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 189812657-189812766 [+]

Database links

Mature ppa-miR-205

Accession MIMAT0002543
Description Pan paniscus ppa-miR-205 mature miRNA
Sequence 34 - UCCUUCAUUCCACCGGAGUCUG - 55
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24