miRBase entry: ptr-mir-214

Stem-loop ptr-mir-214


Accession
MI0002857
Description
Pan troglodytes ptr-mir-214 precursor miRNA
Gene family
MIPF0000062; mir-214


Sequence

ggccuggcuggacagaguugucaugugucugccugucuacacuugcugugcagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure
ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 150502000-150502109 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-214

Accession MIMAT0002554
Description Pan troglodytes ptr-miR-214 mature miRNA
Sequence 71 - ACAGCAGGCACAGACAGGCAG - 91
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24