miRBase entry: ptr-mir-216a

Stem-loop ptr-mir-216a


Accession
MI0002862
Description
Pan troglodytes ptr-mir-216a precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

gauggcugugaguuggcUUAAUCUCAGCUGGCAACUGUgagauguucauacaaucccucacaguggucucugggauuaugcuaaacagagcaauuuccuagcccucacga
((.(((((.((((((((.(((((((((..(((.((((((((.(((....)))....)))))))).))).))))))))).)))))..........))).))))).))....

Structure
----  u     u   ----------     U         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUgag    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr2A: 57256906-57257015 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-216a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-216a

Accession MIMAT0002559
Description Pan troglodytes ptr-miR-216a mature miRNA
Sequence 18 - UUAAUCUCAGCUGGCAACUGU - 38
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24