miRBase entry: ptr-mir-218-1

Stem-loop ptr-mir-218-1


Accession
MI0002873
Description
Pan troglodytes ptr-mir-218-1 precursor miRNA
Gene family
MIPF0000026; mir-218


Sequence

gugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugcgagguaugaguaaaacaugguuccgucaagcaccauggaacgucacgcagcuuucuaca
(((..((.((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).))))..))).

Structure
-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr4: 20855976-20856085 [+]

Database links

Mature ptr-miR-218

Accession MIMAT0002570
Description Pan troglodytes ptr-miR-218 mature miRNA
Sequence 25 - UUGUGCUUGAUCUAACCAUGU - 45
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24