miRBase entry: ppy-mir-219-1

Stem-loop ppy-mir-219-1


Accession
MI0002886
Description
Pongo pygmaeus ppy-mir-219-1 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

ccgccccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUcgagucuauggccccggccgagaguugagucuggacgucccgagccgccgcccccaaaccucgagcggg
((((.(.((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).)))).........).)))).

Structure
-    c --------c    c       cU   U     A  G         a   uau 
 ccgc c         gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
 |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
 ggcg g         cccg cgccgag  cug caggu ug guugagagc cgg   c
g    a cuccaaacc    c       cc   -     c  a         -   ccc 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
NW_002874576.1: 1044940-1045049 [+]

Database links

Mature ppy-miR-219

Accession MIMAT0002577
Description Pongo pygmaeus ppy-miR-219 mature miRNA
Sequence 21 - UGAUUGUCCAAACGCAAUUCU - 41
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24