miRBase entry: ptr-mir-198

Stem-loop ptr-mir-198


Accession
MI0002918
Description
Pan troglodytes ptr-mir-198 precursor miRNA
Gene family
MIPF0000090; mir-198


Sequence

ucauuGGUCCAGAGGGGAGAUAGGuuccugugauuuuuccuucuucucuguagaauaaauga
(((((..((.(.((((((((.(((..............))))))))))).).))...)))))

Structure
     -GG  C G        U   uuccug 
ucauu   UC A AGGGGAGA AGG      u
|||||   || | |||||||| |||       
aguaa   ag u ucucuucu ucc      g
     aua  a g        -   uuuuua 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 123540858-123540919 [-]

Database links

Mature ptr-miR-198

Accession MIMAT0002609
Description Pan troglodytes ptr-miR-198 mature miRNA
Sequence 6 - GGUCCAGAGGGGAGAUAGG - 24
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24