miRBase entry: ptr-mir-30d

Stem-loop ptr-mir-30d


Accession
MI0002926
Description
Pan troglodytes ptr-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
1 open access papers mention ptr-mir-30d
(1 sentences)

Sequence

guuguUGUAAACAUCCCCGACUGGAAGcuguaagacacagcuaagcuuucagucagauguuugcugcuac
...((.(((((((((...(((((((((((..............))))))))))).))))))))).))...

Structure
guu  U         CCC           guaaga 
   gu GUAAACAUC   GACUGGAAGcu      c
   || |||||||||   |||||||||||       
   cg cguuuguag   cugacuuucga      a
cau  u         --a           aucgac 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr8: 137277018-137277087 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-30d

Accession MIMAT0002617
Description Pan troglodytes ptr-miR-30d mature miRNA
Sequence 6 - UGUAAACAUCCCCGACUGGAAG - 27
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24