miRBase entry: ppa-mir-30d

Stem-loop ppa-mir-30d

Accession

MI0002929

Description

Pan paniscus ppa-mir-30d precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

guuguUGUAAACAUCCCCGACUGGAAGcuguaagacacagcuaagcuuucagucagauguuugcugcuac
...((.(((((((((...(((((((((((..............))))))))))).))))))))).))...

Structure

guu  U         CCC           guaaga 
   gu GUAAACAUC   GACUGGAAGcu      c
   || |||||||||   |||||||||||       
   cg cguuuguag   cugacuuucga      a
cau  u         --a           aucgac

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr8: 134430104-134430173 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-30d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-30d

Accession	MIMAT0002620
Description	Pan paniscus ppa-miR-30d mature miRNA
Sequence	6 - UGUAAACAUCCCCGACUGGAAG - 27
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24