miRBase entry: ptr-mir-181b-1

Stem-loop ptr-mir-181b-1


Accession
MI0002934
Description
Pan troglodytes ptr-mir-181b-1 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

ccugugcagagauuauuuuuuaaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUugaacuguguggacaagcucacugaacaaugaaugcaacuguggccccgc
.........................(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....)))))))....

Structure
ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaac   g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUu    ugu u
                         |||||||     |||||||||   ||||||||||    |||  
                         ccggugu     guaaguaac   agucacucga    aca g
---------------------cgcc       -caac         --a          ----   g 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 177685189-177685296 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-181b

Accession MIMAT0002625
Description Pan troglodytes ptr-miR-181b mature miRNA
Sequence 36 - AACAUUCAUUGCUGUCGGUGGGU - 58
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24