miRBase entry: ptr-mir-15a

Stem-loop ptr-mir-15a


Accession
MI0002961
Description
Pan troglodytes ptr-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
2 open access papers mention ptr-mir-15a
(2 sentences)

Sequence

ccuuggaguaaagUAGCAGCACAUAAUGGUUUGUGgauuuugaaaaggugcaggccauauugugcugccucaaaaauacaagg
(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))

Structure
     gaguaaa UA        UA          gauuu 
ccuug       g  GCAGCACA  AUGGUUUGUG     u
|||||       |  ||||||||  ||||||||||     g
ggaac       c  cgucgugu  uaccggacgu     a
     auaaaaa uc        ua          ggaaa 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr13: 35079678-35079760 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-15a

Accession MIMAT0002654
Description Pan troglodytes ptr-miR-15a mature miRNA
Sequence 14 - UAGCAGCACAUAAUGGUUUGUG - 35
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24