miRBase entry: ptr-mir-16-1

Stem-loop ptr-mir-16-1


Accession
MI0002962
Description
Pan troglodytes ptr-mir-16-1 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

gucagcagugccuUAGCAGCACGUAAAUAUUGGCGuuaagauucuaaaauuaucuccaguauuaacugugcugcugaaguaagguugac
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure
      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr13: 35079532-35079620 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-16-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-16

Accession MIMAT0002655
Description Pan troglodytes ptr-miR-16 mature miRNA
Sequence 14 - UAGCAGCACGUAAAUAUUGGCG - 35
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24