miRBase entry: ptr-mir-19a

Stem-loop ptr-mir-19a


Accession
MI0002997
Description
Pan troglodytes ptr-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

gcaguccucuguuaguuuugcauaguugcacuacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure
    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr13: 77006997-77007078 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-19a

Accession MIMAT0002696
Description Pan troglodytes ptr-miR-19a mature miRNA
Sequence 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24