miRBase entry: ptr-mir-92-1

Stem-loop ptr-mir-92-1


Accession
MI0003000
Description
Pan troglodytes ptr-mir-92-1 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

cuuucuacacagguugggaucgguugcaaugcuguguuucuguauggUAUUGCACUUGUCCCGGCCUGUugaguuugg
....((..((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))..)).....

Structure
-cuuu  ac            c   u           uu 
     cu  acagguugggau ggu gcaaugcugug  u
     ||  |||||||||||| ||| |||||||||||   
     ga  UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu  gu            U   -           gu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr13: 77007420-77007497 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-92-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-92

Accession MIMAT0002699
Description Pan troglodytes ptr-miR-92 mature miRNA
Sequence 48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24