miRBase entry: ptr-mir-215

Stem-loop ptr-mir-215


Accession
MI0003027
Description
Pan troglodytes ptr-mir-215 precursor miRNA
Gene family
MIPF0000063; mir-192


Sequence

aucauucagaaaugguauacgggaaaAUGACCUAUGAAUUGACAGACaauauagcugaguuugucugucauuucuuuaggccaauauucuguaugacugugcuacuucaa
...........(((((((((((((...((.((((.(((.((((((((((...........)))))))))).)))..)))).))...)))))))).)))))..........

Structure
aucauucagaa     -        aaA  A    -U   U          uaua 
           auggu auacggga   UG CCUA  GAA UGACAGACaa    g
           ||||| ||||||||   || ||||  ||| ||||||||||    c
           uguca uaugucuu   ac ggau  cuu acugucuguu    u
-aacuucaucg     g        aua  c    uu   u          ugag 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 199161361-199161470 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-215
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-215

Accession MIMAT0002730
Description Pan troglodytes ptr-miR-215 mature miRNA
Sequence 27 - AUGACCUAUGAAUUGACAGAC - 47
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24