miRBase entry: ppy-mir-24-2

Stem-loop ppy-mir-24-2

Accession

MI0003047

Description

Pongo pygmaeus ppy-mir-24-2 precursor miRNA

Gene family

MIPF0000041; mir-24

Sequence

cucugccucccgugccuacugagcugaaacacaguugguuuguguacacUGGCUCAGUUCAGCAGGAACAGgg
(((((..(((.((....(((((((((..((((((.....))))))....)))))))))...)).))).)))))

Structure

     cc   c  gccu         --aa      u 
cucug  ucc gu    acugagcug    acacag u
|||||  ||| ||    |||||||||    |||||| g
ggGAC  AGG CG    UGACUCGGU    uguguu g
     -A   A  -ACU         caca      u

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

NW_002966782.1: 22997-23069 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-24-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-24-3p

Accession	MIMAT0002339
Description	Pongo pygmaeus ppy-miR-24-3p mature miRNA
Sequence	50 - UGGCUCAGUUCAGCAGGAACAG - 71
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24