miRBase entry: ptr-mir-23a

Stem-loop ptr-mir-23a


Accession
MI0003048
Description
Pan troglodytes ptr-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

ggccggcugggguuccuggggaugggauuugcuuccugucacaaAUCACAUUGCCAGGGAUUUCCaaccgacc
((.(((.((((((((((((.((((.((((((..........)))))).)))).))))))).))))).))).))

Structure
  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr19: 14579433-14579505 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-23a

Accession MIMAT0002749
Description Pan troglodytes ptr-miR-23a mature miRNA
Sequence 45 - AUCACAUUGCCAGGGAUUUCC - 65
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24