miRBase entry: ptr-mir-24-2

Stem-loop ptr-mir-24-2


Accession
MI0003050
Description
Pan troglodytes ptr-mir-24-2 precursor miRNA
Gene family
MIPF0000041; mir-24

Literature search
1 open access papers mention ptr-mir-24-2
(15 sentences)

Sequence

cucugccucccgugccuacugagcugaaacacaguugguuuguguacacUGGCUCAGUUCAGCAGGAACAGgg
(((((..(((.((....(((((((((..((((((.....))))))....)))))))))...)).))).)))))

Structure
     cc   c  gccu         --aa      u 
cucug  ucc gu    acugagcug    acacag u
|||||  ||| ||    |||||||||    |||||| g
ggGAC  AGG CG    UGACUCGGU    uguguu g
     -A   A  -ACU         caca      u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr19: 14579133-14579205 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-24-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-24

Accession MIMAT0002751
Description Pan troglodytes ptr-miR-24 mature miRNA
Sequence 50 - UGGCUCAGUUCAGCAGGAACAG - 71
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24