miRBase entry: ppy-mir-93

Stem-loop ppy-mir-93

Accession

MI0003068

Description

Pongo pygmaeus ppy-mir-93 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention ppy-mir-93
(2 sentences)

Sequence

cugggggcuccAAAGUGCUGUUCGUGCAGGUAGugugauuacccgaccuacugcugagcuagcacuucccgagcccccgg
((((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))))

Structure

          -cA       -     U    G   u  gau 
cugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
||||||||||   ||||||| ||||| |||| ||| ||   a
ggcccccgag   uucacga cgagu cguc auc ca   c
          ccc       u     -    -   -  gcc

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 9079061-9079140 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-93

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-93

Accession	MIMAT0002767
Description	Pongo pygmaeus ppy-miR-93 mature miRNA
Sequence	12 - AAAGUGCUGUUCGUGCAGGUAG - 33
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24