miRBase entry: ptr-mir-106b

Stem-loop ptr-mir-106b


Accession
MI0003070
Description
Pan troglodytes ptr-mir-106b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ccugccggggcUAAAGUGCUGACAGUGCAGAUagugguccucuccgugcuaccgcacuguggguacuugcugcuccagcagg
(((((.(((((..(((((((.(((((((.(.((((((......))..))))).))))))).)))))))...))))).)))))

Structure
     c     -UA       G       A A    --  uc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagu  gg  c
||||| |||||   ||||||| ||||||| | ||||  ||   
ggacg ccucg   uucaugg ugucacg c aucg  cc  u
     a     ucg       g       c -    ug  uc 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr7: 103151247-103151328 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-106b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-106b

Accession MIMAT0002769
Description Pan troglodytes ptr-miR-106b mature miRNA
Sequence 12 - UAAAGUGCUGACAGUGCAGAU - 32
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24