miRBase entry: ptr-mir-93

Stem-loop ptr-mir-93


Accession
MI0003071
Description
Pan troglodytes ptr-mir-93 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

cugggggcuccAAAGUGCUGUUCGUGCAGGUAGugugauuacccgaccuacugcugagcuagcacuucccgagcccccgg
((((((((((..((((((((((((.((((.(((.((.........)))))))))))))).)))))))...))))))))))

Structure
          -cA       -     U    G   u  gau 
cugggggcuc   AAGUGCU GUUCG GCAG UAG gu   u
||||||||||   ||||||| ||||| |||| ||| ||   a
ggcccccgag   uucacga cgagu cguc auc ca   c
          ccc       u     -    -   -  gcc 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr7: 103151022-103151101 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-93

Accession MIMAT0002770
Description Pan troglodytes ptr-miR-93 mature miRNA
Sequence 12 - AAAGUGCUGUUCGUGCAGGUAG - 33
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24