miRBase entry: ptr-mir-25

Stem-loop ptr-mir-25


Accession
MI0003072
Description
Pan troglodytes ptr-mir-25 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
1 open access papers mention ptr-mir-25
(1 sentences)

Sequence

ggccaguguugagaggcggagacuugggcaauugcuggacgcugcccugggCAUUGCACUUGUCUCGGUCUGacagugccggcc
((((.((((((..((((.(((((..(.(((((..((((........))))..))))).)..))))).))))..)))))).))))

Structure
    a      ag    g     uu g     ug    acg 
ggcc guguug  aggc gagac  g gcaau  cugg   c
|||| ||||||  |||| |||||  | |||||  ||||    
ccgg cgugac  UCUG CUCUG  C CGUUA  gguc   u
    c      aG    G     UU A     Cg    ccg 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated. The assembled chimp genome sequence forces a single deletion in the 3' region of the chimp mature miRNA with respect to the human and rodent sequences.

Genome context
chr7: 103150814-103150897 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-25

Accession MIMAT0002771
Description Pan troglodytes ptr-miR-25 mature miRNA
Sequence 52 - CAUUGCACUUGUCUCGGUCUG - 72
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24