miRBase entry: ptr-mir-96

Stem-loop ptr-mir-96


Accession
MI0003087
Description
Pan troglodytes ptr-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96


Sequence

uggccgauUUUGGCACUAGCACAUUUUUGCuugugucucuccgcucugagcaaucaugugcagugccaauaugggaaa
...((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))...

Structure
ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCuu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr7: 134297412-134297489 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-96

Accession MIMAT0002786
Description Pan troglodytes ptr-miR-96 mature miRNA
Sequence 9 - UUUGGCACUAGCACAUUUUUGC - 30
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24