miRBase entry: ppa-mir-106a

Stem-loop ppa-mir-106a


Accession
MI0003102
Description
Pan paniscus ppa-mir-106a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ccuuggccauguAAAAGUGCUUACAGUGCAGGUAGCuuuuugagaucuacugcaaugcaagcacuucuuacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure
  u   cc      -        A  G     G   C   u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacauu uucacgaa gu acguc auc aga  
  u   au      c        c  a     -   u   g 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 133616492-133616572 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppa-mir-106a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-106a

Accession MIMAT0002797
Description Pan paniscus ppa-miR-106a mature miRNA
Sequence 13 - AAAAGUGCUUACAGUGCAGGUAGC - 36
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24