miRBase entry: ptr-mir-19b-2

Stem-loop ptr-mir-19b-2


Accession
MI0003113
Description
Pan troglodytes ptr-mir-19b-2 precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

gacauugcuacuuacaauuaguuuugcagguuugcauuucagcguauauauguauauguggcUGUGCAAAUCCAUGCAAAACUGAuugugauaaugu
.((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))

Structure
g      cuac                 -  -       uuca       u 
 acauug    uuacaauuaguuuugca gg uuugcau    gcguaua a
 ||||||    ||||||||||||||||| || |||||||    |||||||  
 uguaau    aguguuAGUCAAAACGU CC AAACGUG    uguauau u
-      ----                 A  U       Ucgg       g 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 134037891-134037987 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-19b

Accession MIMAT0002698
Description Pan troglodytes ptr-miR-19b mature miRNA
Sequence 63 - UGUGCAAAUCCAUGCAAAACUGA - 85
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24