Stem-loop sequence hsa-mir-432

Accession

MI0003133 (change log)

Symbol

HGNC:MIR432

Description

Homo sapiens miR-432 stem-loop

Gene family

MIPF0000211; mir-432

Literature search

42 open access papers mention hsa-mir-432
(380 sentences)

Stem-loop

   u  -  c       u u     ua       g     a   u -  uu 
5'  ga cu cuccagg c uggag  ggucauu ggugg ucc c ua  u
    || || ||||||| | |||||  ||||||| ||||| ||| | ||   
3'  cu ga gagguuc g accuc  ucgguag ucacc ggg g au  c
   a  a  u       u u     -c       g     -   u c  uc 

Deep sequencing

28148 reads, 55.6 reads per million, 126 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 100884483-100884576 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000414309 ; WDR25-007; intron 1

  OTTHUMT00000414313 ; WDR25-008; intron 1

  OTTHUMT00000414315 ; WDR25-005; intron 1

  OTTHUMT00000414316 ; WDR25-006; intron 1

  OTTHUMT00000414310 ; WDR25-002; intron 2

  OTTHUMT00000414311 ; WDR25-001; intron 2

  OTTHUMT00000414312 ; WDR25-004; intron 2

  OTTHUMT00000414314 ; WDR25-003; intron 2

  ENST00000555775 ; WDR25-007; intron 1

  ENST00000554492 ; WDR25-008; intron 1

  ENST00000557710 ; WDR25-005; intron 1

  ENST00000542471 ; WDR25-006; intron 1

  ENST00000554998 ; WDR25-002; intron 2

  ENST00000402312 ; WDR25-001; intron 2

  ENST00000335290 ; WDR25-004; intron 2

  ENST00000554175 ; WDR25-003; intron 2

Clustered miRNAs

< 10kb from hsa-mir-432

• hsa-mir-337: chr14: 100874493-100874585 [+]
• hsa-mir-665: chr14: 100875033-100875104 [+]
• hsa-mir-431: chr14: 100881007-100881120 [+]
• hsa-mir-433: chr14: 100881886-100881978 [+]
• hsa-mir-127: chr14: 100882979-100883075 [+]
• hsa-mir-432: chr14: 100884483-100884576 [+]
• hsa-mir-136: chr14: 100884702-100884783 [+]

Database links

• EntrezGene:MIR432
• HGNC:MIR432
• RNAcentral:URS00006284D8_9606
• miRBase Tracker:MI0003133

Mature sequence hsa-miR-432-5p

• Accession: MIMAT0002814
• Previous IDs: hsa-miR-432
• Sequence: 14 - ucuuggaguaggucauugggugg - 36
• Deep sequencing: 28093 reads, 128 experiments
• Evidence: experimental; array-cloned [1], cloned [2-3]
• Database links:
  • RNAcentral:URS00001C406A_9606
• Predicted targets:
  • TargetMiner:hsa-miR-432-5p
  • TargetScanVert:hsa-miR-432-5p
  • miRDB:hsa-miR-432-5p
  • microrna.org:hsa-miR-432-5p

Mature sequence hsa-miR-432-3p

• Accession: MIMAT0002815
• Previous IDs: hsa-miR-432*
• Sequence: 62 - cuggauggcuccuccaugucu - 82
• Deep sequencing: 47 reads, 34 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-432-3p
  • TargetScanVert:hsa-miR-432-3p
  • miRDB:hsa-miR-432-3p
  • microrna.org:hsa-miR-432-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).