Stem-loop sequence hsa-mir-512-1

Accession

MI0003140 (change log)

Symbol

HGNC:MIR512-1

Description

Homo sapiens miR-512-1 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

42 open access papers mention hsa-mir-512-1
(249 sentences)

Stem-loop

   u       ug   ca      cu   g       ----    g 
5'  cucaguc  ugg  cucagc  uga ggcacuu    ucug u
    |||||||  |||  ||||||  ||| |||||||    ||||  
3'  gagucag  acc  gagucg  acu ucgugaa    agac g
   g       ua   ug      au   g       agua    c 

Deep sequencing

346 reads, 0 reads per million, 36 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53666679-53666762 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000464184 ; CTD-2245F17.2-001; exon 2

  ENST00000600257 ; CTD-2245F17.2-001; exon 2

  antisense

  OTTHUMT00000464177 ; ZNF665-007; intron 1

  ENST00000596564 ; ZNF665-007; intron 1

Clustered miRNAs

< 10kb from hsa-mir-512-1

• hsa-mir-512-1: chr19: 53666679-53666762 [+]
• hsa-mir-512-2: chr19: 53669157-53669254 [+]
• hsa-mir-1323: chr19: 53671968-53672040 [+]
• hsa-mir-498: chr19: 53674197-53674320 [+]
• hsa-mir-520e: chr19: 53675711-53675797 [+]

Database links

• EntrezGene:MIR512-1
• HGNC:MIR512-1
• RNAcentral:URS000075DF19_9606
• miRBase Tracker:MI0003140

Mature sequence hsa-miR-512-5p

• Accession: MIMAT0002822
• Sequence: 14 - cacucagccuugagggcacuuuc - 36
• Deep sequencing: 126 reads, 20 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-512-5p
  • TargetScanVert:hsa-miR-512-5p
  • miRDB:hsa-miR-512-5p
  • microrna.org:hsa-miR-512-5p

Mature sequence hsa-miR-512-3p

• Accession: MIMAT0002823
• Sequence: 51 - aagugcugucauagcugagguc - 72
• Deep sequencing: 562 reads, 28 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS000020F110_9606
• Predicted targets:
  • TargetMiner:hsa-miR-512-3p
  • TargetScanVert:hsa-miR-512-3p
  • miRDB:hsa-miR-512-3p
  • microrna.org:hsa-miR-512-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).