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miRBase |
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Stem-loop sequence hsa-mir-520d |
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Accession | MI0003164 (change log) | |||||||||||||||||||||
Symbol | HGNC:MIR520D | |||||||||||||||||||||
Description | Homo sapiens miR-520d stem-loop | |||||||||||||||||||||
Gene family | MIPF0000020; mir-515 | |||||||||||||||||||||
Literature search |
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54 open access papers mention hsa-mir-520d | |||||||||||||||||||||
Stem-loop |
g ua c guug u 5' ucucaagcuguga uc caaagggaagc cuuucu uc a ||||||||||||| || ||||||||||| |||||| || a 3' agaguuuggcauu gg guuucucuucg gaaaga ag a g ug u --aa a |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
The mature products were previously named miR-520d and miR-520d* here and in [1]. Landgraf et al. show that both products may be significantly expressed [2]. They are therefore renamed miR-520d-5p and miR-520d-3p. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations. |
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence hsa-miR-520d-5p |
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Accession | MIMAT0002855 |
Previous IDs | hsa-miR-520d* |
Sequence |
16 - cuacaaagggaagcccuuuc - 35 |
Deep sequencing | 90 reads, 25 experiments |
Evidence | experimental; array-cloned [1], cloned [2] |
Predicted targets |
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Mature sequence hsa-miR-520d-3p |
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Accession | MIMAT0002856 |
Previous IDs | hsa-miR-520d |
Sequence |
54 - aaagugcuucucuuuggugggu - 75 |
Deep sequencing | 58 reads, 26 experiments |
Evidence | experimental; array-cloned [1], cloned [2] |
Predicted targets |
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References |
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1 |
PMID:15965474
"Identification of hundreds of conserved and nonconserved human microRNAs"
Nat Genet. 37:766-770(2005).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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