Stem-loop sequence hsa-mir-517b

Accession

MI0003165 (change log)

Symbol

HGNC:MIR517B

Description

Homo sapiens miR-517b stem-loop

Gene family

MIPF0000020; mir-515

Literature search

20 open access papers mention hsa-mir-517b
(60 sentences)

Stem-loop

        c       u   a    u    guugu 
5' gugac cucuaga gga gcac gucu     c
   ||||| ||||||| ||| |||| ||||     u
3' cauug gagauuu ccu cgug uaga     a
        u       c   a    c    aaaga 

Deep sequencing

495 reads, 1.33 reads per million, 75 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53721076-53721142 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-517b

• hsa-mir-517a: chr19: 53712268-53712354 [+]
• hsa-mir-519d: chr19: 53713347-53713434 [+]
• hsa-mir-521-2: chr19: 53716594-53716680 [+]
• hsa-mir-520d: chr19: 53720096-53720182 [+]
• hsa-mir-517b: chr19: 53721076-53721142 [+]
• hsa-mir-520g: chr19: 53722166-53722255 [+]
• hsa-mir-516b-2: chr19: 53725442-53725526 [+]
• hsa-mir-526a-2: chr19: 53726922-53726986 [+]
• hsa-mir-518e: chr19: 53729838-53729925 [+]
• hsa-mir-518a-1: chr19: 53731006-53731090 [+]

Database links

• EntrezGene:MIR517B
• HGNC:MIR517B
• RNAcentral:URS000075C4A5_9606
• miRBase Tracker:MI0003165

Mature sequence hsa-miR-517-5p

• Accession: MIMAT0002851
• Previous IDs: hsa-miR-517*
• Sequence: 6 - ccucuagauggaagcacugucu - 27
• Deep sequencing: 45 reads, 11 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-517-5p
  • TargetScanVert:hsa-miR-517-5p
  • miRDB:hsa-miR-517-5p
  • microrna.org:hsa-miR-517-5p

Mature sequence hsa-miR-517b-3p

• Accession: MIMAT0002857
• Previous IDs: hsa-miR-517b
• Sequence: 43 - aucgugcaucccuuuagagugu - 64
• Deep sequencing: 477 reads, 70 experiments
• Evidence: experimental; array-cloned [1]
• Database links:
  • RNAcentral:URS00000D4AB5_9606
• Predicted targets:
  • TargetMiner:hsa-miR-517b-3p
  • TargetScanVert:hsa-miR-517b-3p
  • miRDB:hsa-miR-517b-3p
  • microrna.org:hsa-miR-517b-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).