Stem-loop sequence hsa-mir-516b-1

Accession

MI0003172 (change log)

Previous IDs

hsa-mir-516-4

Symbol

HGNC:MIR516B1

Description

Homo sapiens miR-516b-1 stem-loop

Gene family

MIPF0000020; mir-515

Literature search

18 open access papers mention hsa-mir-516b-1
(36 sentences)

Stem-loop

          cu      a        uaa            g    g 
5' ucucagg  gugacc ucuggagg   gaagcacuuucu uuuu u
   |||||||  |||||| ||||||||   |||||||||||| |||| g
3' agaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
          cu      g        ---            a    a 

Deep sequencing

939 reads, 0 reads per million, 76 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53736845-53736934 [+]
• Overlapping transcripts:

  antisense

  ENST00000333952 ; ZNF677-201; 3'UTR (exon 6)

Clustered miRNAs

< 10kb from hsa-mir-516b-1

• hsa-mir-526a-2: chr19: 53726922-53726986 [+]
• hsa-mir-518e: chr19: 53729838-53729925 [+]
• hsa-mir-518a-1: chr19: 53731006-53731090 [+]
• hsa-mir-518d: chr19: 53734877-53734963 [+]
• hsa-mir-516b-1: chr19: 53736845-53736934 [+]
• hsa-mir-518a-2: chr19: 53739333-53739419 [+]
• hsa-mir-517c: chr19: 53741313-53741407 [+]
• hsa-mir-520h: chr19: 53742512-53742599 [+]

Database links

• EntrezGene:MIR516B1
• HGNC:MIR516B1
• RNAcentral:URS00006ACABB_9606
• miRBase Tracker:MI0003172

Mature sequence hsa-miR-516b-5p

• Accession: MIMAT0002859
• Previous IDs: hsa-miR-516-5p;hsa-miR-516b
• Sequence: 16 - aucuggagguaagaagcacuuu - 37
• Deep sequencing: 1217 reads, 50 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS000005E7DD_9606
• Predicted targets:
  • TargetMiner:hsa-miR-516b-5p
  • TargetScanVert:hsa-miR-516b-5p
  • miRDB:hsa-miR-516b-5p
  • microrna.org:hsa-miR-516b-5p

Mature sequence hsa-miR-516b-3p

• Accession: MIMAT0002860
• Previous IDs: hsa-miR-516-3p;hsa-miR-516b*;hsa-miR-516a-3p;hsa-miR-516b*;hsa-miR-516a-3p;hsa-miR-516b*
• Sequence: 61 - ugcuuccuuucagagggu - 78
• Deep sequencing: 462 reads, 29 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-516b-3p
  • TargetScanVert:hsa-miR-516b-3p
  • miRDB:hsa-miR-516b-3p
  • microrna.org:hsa-miR-516b-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).