Stem-loop sequence hsa-mir-513a-2

Accession

MI0003192 (change log)

Previous IDs

hsa-mir-513-2

Symbol

HGNC:MIR513A2

Description

Homo sapiens miR-513a-2 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

46 open access papers mention hsa-mir-513a-2
(290 sentences)

Stem-loop

              --u   -c   u ag      g        a   gg     uc        gaa 
5' ggaugccacau   cag  cau c  ugugca ugccuuuc cag  aggug  auuuaugu   c
   |||||||||||   |||  ||| |  |||||| |||||||| |||  |||||  ||||||||    
3' ccuguggugua   guc  gua g  acaugu augggaag guc  uccac  uaaauaua   u
              uac   ac   c --      a        a   uu     uu        aaa 

Deep sequencing

4314 reads, 20.5 reads per million, 73 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 147225826-147225952 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-513a-2

• hsa-mir-507: chrX: 147230984-147231077 [-]
• hsa-mir-506: chrX: 147230720-147230843 [-]
• hsa-mir-513a-2: chrX: 147225826-147225952 [-]

Database links

• EntrezGene:MIR513A2
• HGNC:MIR513A2
• RNAcentral:URS000075DF42_9606
• miRBase Tracker:MI0003192

Mature sequence hsa-miR-513a-5p

• Accession: MIMAT0002877
• Previous IDs: hsa-miR-513;hsa-miR-513-5p
• Sequence: 36 - uucacagggaggugucau - 53
• Deep sequencing: 5754 reads, 64 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS0000357286_9606
• Predicted targets:
  • TargetMiner:hsa-miR-513a-5p
  • TargetScanVert:hsa-miR-513a-5p
  • miRDB:hsa-miR-513a-5p
  • microrna.org:hsa-miR-513a-5p

Mature sequence hsa-miR-513a-3p

• Accession: MIMAT0004777
• Previous IDs: hsa-miR-513-3p
• Sequence: 71 - uaaauuucaccuuucugagaagg - 93
• Deep sequencing: 2846 reads, 32 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00004BCE9B_9606
• Predicted targets:
  • TargetMiner:hsa-miR-513a-3p
  • TargetScanVert:hsa-miR-513a-3p
  • miRDB:hsa-miR-513a-3p
  • microrna.org:hsa-miR-513a-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).