Stem-loop sequence hsa-mir-508

Accession

MI0003195 (change log)

Symbol

HGNC:MIR508

Description

Homo sapiens miR-508 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

28 open access papers mention hsa-mir-508
(75 sentences)

Stem-loop

        --uuca  ------   -     g   c              gu  c      aaa 
5' ccacc      gc      uga gugua ugc cuacuccagagggc  ca ucaugu   c
   |||||      ||      ||| ||||| ||| ||||||||||||||  || ||||||    
3' ggugg      cg      acu cacau aug gaugagguuuuccg  gu aguaca   u
        uuuaua  caaugc   a     a   a              au  u      aaa 

Deep sequencing

132108 reads, 348 reads per million, 98 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 147236913-147237027 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-508

• hsa-mir-508: chrX: 147236913-147237027 [-]
• hsa-mir-507: chrX: 147230984-147231077 [-]
• hsa-mir-506: chrX: 147230720-147230843 [-]

Database links

• EntrezGene:MIR508
• HGNC:MIR508
• RNAcentral:URS000075C79A_9606
• miRBase Tracker:MI0003195

Mature sequence hsa-miR-508-5p

• Accession: MIMAT0004778
• Sequence: 26 - uacuccagagggcgucacucaug - 48
• Deep sequencing: 5207 reads, 43 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS000021202F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-508-5p
  • TargetScanVert:hsa-miR-508-5p
  • miRDB:hsa-miR-508-5p
  • microrna.org:hsa-miR-508-5p

Mature sequence hsa-miR-508-3p

• Accession: MIMAT0002880
• Previous IDs: hsa-miR-508
• Sequence: 61 - ugauuguagccuuuuggaguaga - 83
• Deep sequencing: 126888 reads, 89 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS000044FE6A_9606
• Predicted targets:
  • TargetMiner:hsa-miR-508-3p
  • TargetScanVert:hsa-miR-508-3p
  • miRDB:hsa-miR-508-3p
  • microrna.org:hsa-miR-508-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).