miRBase entry: osa-MIR530

Stem-loop osa-MIR530


Accession
MI0003203
Description
Oryza sativa osa-MIR530 precursor miRNA
Gene family
MIPF0000521; MIR530

Literature search
15 open access papers mention osa-MIR530
(36 sentences)

Sequence

5 reads, 3 reads per million, 2 experiments
gugauagagcUGCAUUUGCACCUGCACCUAcagagaggaagaugaagcagcaagcuagcaauacgugcuugaucgcuauacgcuagcuucuugcacacaauguuguuccuggucucuuccugaucccuAGGUGCAGAGGCAGAUGCAACuaugucau
((((((.((.(((((((((..(((((((((..((.(((((((.((..(((..(((.((((....((((..((..((((.....)))).))..))))....))))))).))).)))))))))..))..)))))))))..))))))))).)).))))))

Structure
      g  c         AC         ca  -g       u  ag   ca   u    auac    uu  uc    u 
gugaua ag UGCAUUUGC  CUGCACCUA  ga  aggaaga ga  cag  agc agca    gugc  ga  gcua a
|||||| || |||||||||  |||||||||  ||  ||||||| ||  |||  ||| ||||    ||||  ||  |||| c
uacugu uC ACGUAGACG  GACGUGGAu  cu  uccuucu cu  guc  uug uugu    cacg  cu  cgau g
      a  A         GA         cc  ag       -  -g   -c   -    aaca    uu  -u    c 


Annotation confidence Not enough data
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Genome context
Chr4: 8303538-8303694 [-]

Database links

Mature osa-miR530-5p

Accession MIMAT0006787
Description Oryza sativa osa-miR530-5p mature miRNA
Sequence 11 - UGCAUUUGCACCUGCACCUA - 30
Evidence experimental
cloned [2]

Mature osa-miR530-3p

Accession MIMAT0002886
Description Oryza sativa osa-miR530-3p mature miRNA
Sequence 129 - AGGUGCAGAGGCAGAUGCAAC - 149
Evidence experimental
Northern [1]
Database links

References

  1. PubMed ID: 18363789
    Stress-responsive microRNAs in Populus
    "Lu S, Sun YH, Chiang VL"
    "Plant J (2008) 55:131-151

  2. PubMed ID: 16126864
    Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
    "Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X"
    "Plant Physiol (2005) 139:296-305