Stem-loop fru-mir-17-1

Accession

MI0003231

Description

Fugu rubripes fru-mir-17-1 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

gucuguguauugcCAAAGUGCUUACAGUGCAGGUAguucuaugugacaccuacugcaauggaggcacuuacagcaguacucuugac
(((.(.(((((((..(((((((..((.(((((.(((.((.....))...)))))))).))..)))))))...))))))).)..)))

Structure

   -u u       -CA       UA  G     G   --u  u 
guc  g guauugc   AAGUGCU  CA UGCAG UAg   uc a
|||  | |||||||   |||||||  || ||||| |||   || u
cag  c caugacg   uucacgg  gu acguc auc   ag g
   uu u       aca       ag  a     -   cac  u 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602547.1: 13071306-13071391 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fru-mir-17-1

Mature fru-miR-17

• Accession: MIMAT0002916
• Description: Fugu rubripes fru-miR-17 mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: not_experimental

References