Stem-loop tni-mir-17-1

Accession

MI0003232

Description

Tetraodon nigroviridis tni-mir-17-1 precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention tni-mir-17-1
(16 sentences)

Sequence

gucuguguauugcCAAAGUGCUUACAGUGCAGGUAguacuauguaacaccuacugcaauggaggcacuuacagcaguacucuugac
(((.(.(((((((..(((((((..((.(((((.(((.............)))))))).))..)))))))...))))))).)..)))

Structure

   -u u       -CA       UA  G     G   uacua 
guc  g guauugc   AAGUGCU  CA UGCAG UAg     u
|||  | |||||||   |||||||  || ||||| |||     g
cag  c caugacg   uucacgg  gu acguc auc     u
   uu u       aca       ag  a     -   cacaa 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

5: 8188854-8188939 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tni-mir-17-1

Mature tni-miR-17

• Accession: MIMAT0002917
• Description: Tetraodon nigroviridis tni-miR-17 mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUA - 35
• Evidence: not_experimental

References