Stem-loop fru-mir-18

Accession

MI0003233

Description

Fugu rubripes fru-mir-18 precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

uugugcUAAGGUGCAUCUAGUGCAGAUAgugaaauagacuagcaccuacugcccuaagugcuccuucuggcauaag
(((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..)))))))).

Structure

-        --   U    C   U    A   -  aaau 
 uugugcUA  AGG GCAU UAG GCAG UAg ug    a
 ||||||||  ||| |||| ||| |||| ||| ||    g
 aauacggu  ucc cgug auc cguc auc ac    a
g        cu   u    a   c    -   c  gauc 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602547.1: 13071440-13071515 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from fru-mir-18

Mature fru-miR-18

• Accession: MIMAT0002918
• Description: Fugu rubripes fru-miR-18 mature miRNA
• Sequence: 7 - UAAGGUGCAUCUAGUGCAGAUA - 28
• Evidence: not_experimental

References