miRBase entry: tni-mir-18

Stem-loop tni-mir-18


Accession
MI0003234
Description
Tetraodon nigroviridis tni-mir-18 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

uugugcUAAGGUGCAUCUAGUGCAGAUAgugaaauagacuagcaccuacugcccuaagugcuccuucuggcauaag
(((((((((((.((((.(((.((((.(((((...........)).))))))).))).)))).)))..)))))))).

Structure
-        --   U    C   U    A   -  aaau 
 uugugcUA  AGG GCAU UAG GCAG UAg ug    a
 ||||||||  ||| |||| ||| |||| ||| ||    g
 aauacggu  ucc cgug auc cguc auc ac    a
g        cu   u    a   c    -   c  gauc 


Annotation confidence Not enough data
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Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
5: 8188729-8188804 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tni-mir-18
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-18

Accession MIMAT0002919
Description Tetraodon nigroviridis tni-miR-18 mature miRNA
Sequence 7 - UAAGGUGCAUCUAGUGCAGAUA - 28
Evidence not_experimental

References