miRBase entry: tni-mir-194

Stem-loop tni-mir-194


Accession
MI0003260
Description
Tetraodon nigroviridis tni-mir-194 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

gcgcgcuggaUGUAACAGCAACUCCAUGUGGaagcuguauguguguuccaguggaagugcuguuaccugcagagauccacc
...(.(((.(.(((((((((..(((((.(((((((.......)).))))))))))..))))))))).).))).).......

Structure
----gcg g   g U         AC     G     -  ug 
       c cug a GUAACAGCA  UCCAU UGGaa gc  u
       | ||| | |||||||||  ||||| ||||| ||  a
       g gac u cauugucgu  aggug accuu ug  u
ccaccua a   g c         ga     -     g  ug 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
7: 7655321-7655401 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-194
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-194

Accession MIMAT0002944
Description Tetraodon nigroviridis tni-miR-194 mature miRNA
Sequence 11 - UGUAACAGCAACUCCAUGUGG - 31
Evidence not_experimental

References