Stem-loop tni-mir-30b

Accession

MI0003264

Description

Tetraodon nigroviridis tni-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

agauggUGUAAACAUCCUACACUCAGCUgugaucuuuugccgcagaggcugagagaagguuguuuacuugaacuggcugga
((..((((((((((.(((.(.((((((((((.........)))...))))))).).))).)))))))....)))..))...

Structure

---  au   ----       U   A A       ---   auc 
   ag  ggU    GUAAACA CCU C CUCAGCU   gug   u
   ||  |||    ||||||| ||| | |||||||   |||   u
   uc  uca    cauuugu gga g gagucgg   cgc   u
agg  gg   aguu       u   a a       aga   cgu 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

21: 5299008-5299088 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-30b

Mature tni-miR-30b

• Accession: MIMAT0002948
• Description: Tetraodon nigroviridis tni-miR-30b mature miRNA
• Sequence: 7 - UGUAAACAUCCUACACUCAGCU - 28
• Evidence: not_experimental

References