Stem-loop tni-mir-27b

Accession

MI0003268

Description

Tetraodon nigroviridis tni-mir-27b precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

aggcacagagcuuagcugauuggugaacagugauugauuuccucuuugUUCACAGUGGCUAAGUUCUGCAccug
(((..((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))..))).

Structure

-   ca            g    g       u  uug 
 agg  cagagcuuagcu auug ugaacag ga   a
 |||  |||||||||||| |||| ||||||| ||   u
 ucc  GUCUUGAAUCGG UGAC ACUUguu cu   u
g   AC            -    -       u  ccu 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

12: 8516513-8516586 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-27b

Mature tni-miR-27b

• Accession: MIMAT0002952
• Description: Tetraodon nigroviridis tni-miR-27b mature miRNA
• Sequence: 49 - UUCACAGUGGCUAAGUUCUGCA - 70
• Evidence: not_experimental

References