Stem-loop fru-mir-200a

Accession

MI0003303

Description

Fugu rubripes fru-mir-200a precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

ucucaggauccaucuuacccgacagugcuggauuguacuacuguuguucUAACACUGUCUGGUAACGAUGUuuucugggugac
.(((((((..(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..)))))))....

Structure

---u       uc    -     c       c    uugu  u 
    cucagga  cauc uuacc gacagug ugga    ac a
    |||||||  |||| ||||| ||||||| ||||    ||  
    gggucuu  GUAG AAUGG CUGUCAC AUcu    ug c
cagu       uU    C     U       A    -ugu  u 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602537.1: 1332406-1332488 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-200a

Mature fru-miR-200a

• Accession: MIMAT0002981
• Description: Fugu rubripes fru-miR-200a mature miRNA
• Sequence: 50 - UAACACUGUCUGGUAACGAUGU - 71
• Evidence: not_experimental

References