Stem-loop tni-mir-200a

Accession

MI0003304

Description

Tetraodon nigroviridis tni-mir-200a precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

caucuuaccugacagugcuggauuauacuacuguuguucUAACACUGUCUGGUAACGAUGUu
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     u       c    uuau  u 
  cauc uuacc gacagug ugga    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
uU    C     U       A    -ugu  u 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 2991451-2991512 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-200a

Mature tni-miR-200a

• Accession: MIMAT0002982
• Description: Tetraodon nigroviridis tni-miR-200a mature miRNA
• Sequence: 40 - UAACACUGUCUGGUAACGAUGU - 61
• Evidence: not_experimental

References