miRBase entry: fru-mir-200b

Stem-loop fru-mir-200b


Accession
MI0003305
Description
Fugu rubripes fru-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

ggugauuaucuccaucuuacgaggcagcauuggauaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAugaucg
...(((((((..(((..(((.((((((.((((((.............)))))).)))))).))))))..))))))).

Structure
ggu       uc   cu   g      c      uauca 
   gauuauc  cau  uac aggcag auugga     u
   |||||||  |||  ||| |||||| ||||||     c
   cuaguAG  GUA  AUG UCCGUC UAAUcu     a
--g       UA   --   G      A      cuuuc 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
HE602537.1: 1332580-1332656 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from fru-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature fru-miR-200b

Accession MIMAT0002983
Description Fugu rubripes fru-miR-200b mature miRNA
Sequence 50 - UAAUACUGCCUGGUAAUGAUGA - 71
Evidence not_experimental

References