miRBase entry: tni-mir-200b

Stem-loop tni-mir-200b


Accession
MI0003306
Description
Tetraodon nigroviridis tni-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

ccaucuuacgaggcagcauuggauagcaucacuuuuucUAAUACUGCCUGGUAAUGAUGAugaucgucgucugcagg
.((((((((.((((((.((((((.............)))))).)))))).)))).))))..................

Structure
-----------------c    -    g      c      uagca 
                  cauc uuac aggcag auugga     u
                  |||| |||| |||||| ||||||     c
                  GUAG AAUG UCCGUC UAAUcu     a
ggacgucugcugcuaguA    U    G      A      uuuuc 


Annotation confidence Not enough data
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Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
Un_random: 2991281-2991357 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tni-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-200b

Accession MIMAT0002984
Description Tetraodon nigroviridis tni-miR-200b mature miRNA
Sequence 39 - UAAUACUGCCUGGUAAUGAUGA - 60
Evidence not_experimental

References