Stem-loop fru-mir-130

Accession

MI0003311

Description

Fugu rubripes fru-mir-130 precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

uguuguuguccucugcccuuuuucuguugcaccacuggacacugagaugagCAGUGCAAUAUUAAAAGGGCAUuggcug
.......(.((..(((((((((..((((((((..((.............))..))))))))..)))))))))..)))..

Structure

uguuguu u  uc         uc        ca  ggaca 
       g cc  ugcccuuuu  uguugcac  cu     c
       | ||  |||||||||  ||||||||  ||     u
       c gg  ACGGGAAAA  AUAACGUG  ga     g
-----gu -  uU         UU        AC  guaga 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602540.1: 8594274-8594352 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-130

Mature fru-miR-130

• Accession: MIMAT0002989
• Description: Fugu rubripes fru-miR-130 mature miRNA
• Sequence: 52 - CAGUGCAAUAUUAAAAGGGCAU - 73
• Evidence: not_experimental

References