Stem-loop tni-mir-130

Accession

MI0003312

Description

Tetraodon nigroviridis tni-mir-130 precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

uguuguccucugcccuuuuucuguugcaccacuggacacugagaugagCAGUGCAAUAUUAAAAGGGCAUuggc
......((..(((((((((..((((((((..((.............))..))))))))..)))))))))..)).

Structure

uguugu  uc         uc        ca  ggaca 
      cc  ugcccuuuu  uguugcac  cu     c
      ||  |||||||||  ||||||||  ||     u
      gg  ACGGGAAAA  AUAACGUG  ga     g
-----c  uU         UU        AC  guaga 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

4: 1515774-1515847 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-130

Mature tni-miR-130

• Accession: MIMAT0002990
• Description: Tetraodon nigroviridis tni-miR-130 mature miRNA
• Sequence: 49 - CAGUGCAAUAUUAAAAGGGCAU - 70
• Evidence: not_experimental

References