miRBase entry: tni-mir-181b-1

Stem-loop tni-mir-181b-1


Accession
MI0003332
Description
Tetraodon nigroviridis tni-mir-181b-1 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

aaaggucacaaucAACAUUCAUUGCUGUCGGUGGGuuuaacuguauggaagagcucacugaacgaugaaugcaacugugucccagau
...((.((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))).)).....

Structure
--aaa  u    aucAA         CUG           aa  g 
     gg caca     CAUUCAUUG   UCGGUGGGuuu  cu u
     || ||||     |||||||||   |||||||||||  ||  
     cc gugu     guaaguagc   agucacucgag  gg a
uagac  u    -caac         --a           aa  u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
1: 18565043-18565129 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-181b

Accession MIMAT0003004
Description Tetraodon nigroviridis tni-miR-181b mature miRNA
Sequence 14 - AACAUUCAUUGCUGUCGGUGGG - 35
Evidence not_experimental

References