miRBase entry: tni-mir-181a-1

Stem-loop tni-mir-181a-1


Accession
MI0003334
Description
Tetraodon nigroviridis tni-mir-181a-1 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

gcucgccccggugAACAUUCAACGCUGUCGGUGAGUuugagccaaauuggaaaaACCAUCGACCGUUGAUUGUACCccguggc
....(((.(((.(.(((.((((((..(((((((.((((...(((...)))..))))))))))))))))).))).).))).)))

Structure
gcuc   c   u A   U      CU       A    gag   a 
    gcc cgg g ACA UCAACG  GUCGGUG GUuu   cca  
    ||| ||| | ||| ||||||  ||||||| ||||   ||| a
    cgg gcc C UGU AGUUGC  CAGCUAC CAaa   ggu  
----   u   C A   U      --       -    -aa   u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
1: 18565254-18565336 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-181a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-181a-5p

Accession MIMAT0003050
Description Tetraodon nigroviridis tni-miR-181a-5p mature miRNA
Sequence 14 - AACAUUCAACGCUGUCGGUGAGU - 36
Evidence not_experimental

Mature tni-miR-181a-3p

Accession MIMAT0003006
Description Tetraodon nigroviridis tni-miR-181a-3p mature miRNA
Sequence 55 - ACCAUCGACCGUUGAUUGUACC - 76
Evidence not_experimental

References