Stem-loop tni-mir-338

Accession

MI0003336

Description

Tetraodon nigroviridis tni-mir-338 precursor miRNA

Gene family

MIPF0000097; mir-338

Sequence

ggauucucccugcaacaacauccuggugcugccugagucacuuucacaaacUCCAGCAUCAGUGAUUUUGUUGcgggggg
.....(((((((((((((.((((((((((((...((((...........))))))))))))).))).)))))))))))))

Structure

ggauu             c   -         ccu    cacu 
     cucccugcaacaa auc cuggugcug   gagu    u
     ||||||||||||| ||| |||||||||   ||||    u
     ggggggcGUUGUU UAG GACUACGAC   CUca    c
-----             U   U         ---    aaca 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

3: 10941067-10941146 [+]

Mature tni-miR-338

• Accession: MIMAT0003008
• Description: Tetraodon nigroviridis tni-miR-338 mature miRNA
• Sequence: 52 - UCCAGCAUCAGUGAUUUUGUUG - 73
• Evidence: not_experimental

References