miRBase entry: tni-mir-29a-1

Stem-loop tni-mir-29a-1


Accession
MI0003393
Description
Tetraodon nigroviridis tni-mir-29a-1 precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
1 open access papers mention tni-mir-29a-1
(3 sentences)

Sequence

agguugaccgauuucuuuugguguucagaguccaauucuguuucUAGCACCAUUUGAAAUCGGUUAcaguga
....(((((((((((...(((((((((((((...)))))).....)))))))...)))))))))))......

Structure
--aggu           uuu       -----      c 
      ugaccgauuuc   ugguguu     cagagu  
      |||||||||||   |||||||     |||||| c
      AUUGGCUAAAG   ACCACGA     gucuua  
agugac           UUU       Ucuuu      a 


Annotation confidence Not enough data
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Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
9: 9583403-9583474 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-29a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-29a

Accession MIMAT0003054
Description Tetraodon nigroviridis tni-miR-29a mature miRNA
Sequence 45 - UAGCACCAUUUGAAAUCGGUUA - 66
Evidence not_experimental

References