miRBase entry: tni-mir-29a-2

Stem-loop tni-mir-29a-2


Accession
MI0003404
Description
Tetraodon nigroviridis tni-mir-29a-2 precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
1 open access papers mention tni-mir-29a-2
(3 sentences)

Sequence

uguuucuccaccaaaagaugacugauuuccucuggugcuuagagccgccugcagccuucUAGCACCAUUUGAAAUCGGUUAuaaaacuguggaucagugc
......(((((......((((((((((((...(((((((.((((..((.....)).)))))))))))...))))))))))))......))))).......

Structure
-uguuuc     caaaag            cuc       u    cc  c 
       uccac      augacugauuuc   uggugcu agag  gc u
       |||||      ||||||||||||   ||||||| ||||  || g
       aggug      uAUUGGCUAAAG   ACCACGA Ucuu  cg c
cgugacu     ucaaaa            UUU       -    -c  a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context
Un_random: 8673465-8673564 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-29a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tni-miR-29a

Accession MIMAT0003054
Description Tetraodon nigroviridis tni-miR-29a mature miRNA
Sequence 60 - UAGCACCAUUUGAAAUCGGUUA - 81
Evidence not_experimental

References